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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71461736_71462430_R

Intron Information:

Intron Rank:
142081
Intron Class:
major
Intron Phase:
Intron Coordinates:
71461736 - 71462430
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATCTTCTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
79
0.72
1
78.4
31.2
Major PPT
100
1.12
0.4
100
0
Minor 5ss
33.7
-1.9
3
42
44.7
Minor BPS
69.4
0.69
1.5
82.24
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023775
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037227
71454854 - 71462618
7765