Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71462559_71464851_R

Intron Information:

Intron Rank:

142075

Intron Class:

major

Intron Phase:

Intron Coordinates:

71462559 - 71464851

Intron Length:

2293

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTAATTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TAATTTTTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.8

1.15

0.6

96.1

12.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

87.5

0.84

0.8

81.9

33.4

Minor 5ss

37.4

-1.4

2.8

50.6

45.9

Minor BPS

0.83

1.1

81.34

34.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023775

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021440

71462256 - 71465381

3126