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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71464911_71464994_R

Intron Information:

Intron Rank:
142079
Intron Class:
major
Intron Phase:
Intron Coordinates:
71464911 - 71464994
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCCAGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
CTTTCTCCAGCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
78.3
0.64
0.8
74.7
28.9
Minor 5ss
33.7
-1.9
3
42
44.7
Minor BPS
46.7
-0.2
2.1
64.2
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023775
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025032
71452031 - 71465921
13891