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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71570322_71576782_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
71570322 - 71576782
Intron Length:
6461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCTTT
5'SS Class:
weak_major
3'SS Sequence:
TCTTTTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TCTTTTCTCACA
Flanking Amino Acid:
LEDPDSEQTKAFVEAQNKLT
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
78.8
38.3
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
87.9
0.85
0.6
83.5
24.9
Minor 5ss
68.6
0.63
2.3
82.3
37.5
Minor BPS
49
-0
2
66.77
40.3

Associated Gene:

Gene:
PREP
Ensembl Gene ID:
ENSAPLG00000014895
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015596
71569144 - 71668465
99322