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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71576917_71578614_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
71576917 - 71578614
Intron Length:
1698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTGATTTTACCC
Flanking Amino Acid:
KYSCHFKKGKRYFHFYNTGL
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.8
0.74
0.7
81.2
30.9
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
49.4
-0
1.7
57.59
42

Associated Gene:

Gene:
PREP
Ensembl Gene ID:
ENSAPLG00000014895
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015596
71569144 - 71668465
99322