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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71578746_71580101_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
71578746 - 71580101
Intron Length:
1356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTGAA
5'SS Class:
major
3'SS Sequence:
TCCAATTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TGGTTCTTACCA
Flanking Amino Acid:
LSDDGTVALRGYAFSEDGEY
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.2
69.7
36.7
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
69.1
0.43
0.9
61.1
39.7
Minor 5ss
27
-2.6
3.1
31.6
42.8
Minor BPS
64.2
0.44
1.6
71.37
41

Associated Gene:

Gene:
PREP
Ensembl Gene ID:
ENSAPLG00000014895
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015596
71569144 - 71668465
99322