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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71580312_71581490_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
71580312 - 71581490
Intron Length:
1179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TACATTTCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTAGTTTAAAT
Flanking Amino Acid:
CYPKQDGKSDGTETSTNLHQ
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
66
0.36
0.9
59.7
41.2
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
56.3
0.28
1.9
76.36
40.1

Associated Gene:

Gene:
PREP
Ensembl Gene ID:
ENSAPLG00000014895
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015596
71569144 - 71668465
99322