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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71581613_71591307_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71581613 - 71591307
Intron Length:
9695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
CTATAATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTTCTATAATT
Flanking Amino Acid:
DEPKWMGGAEVSDDGRYVLL
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
84
0.85
0.9
75
39.9
Major PPT
71.7
0.49
0.9
62.8
42.8
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
75.9
0.89
1.5
92.75
29.1

Associated Gene:

Gene:
PREP
Ensembl Gene ID:
ENSAPLG00000014895
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015596
71569144 - 71668465
99322