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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71591414_71615436_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
71591414 - 71615436
Intron Length:
24023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGATCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
ATGTGTTTGATC
Flanking Amino Acid:
DLQRESQGISGILHWVKLID
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
85.4
31.7
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
83.6
0.76
0.8
77.5
36.5
Minor 5ss
37.6
-1.4
3.6
57.9
46.7
Minor BPS
52.5
0.06
1.7
62.79
37.7

Associated Gene:

Gene:
PREP
Ensembl Gene ID:
ENSAPLG00000014895
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015596
71569144 - 71668465
99322