About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71615629_71625855_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
71615629 - 71625855
Intron Length:
10227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTCTTTTTGACT
Flanking Amino Acid:
LIPEHERDVLEWVACVRSNF
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
84.4
0.77
0.8
80.4
31.5
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
75.1
0.87
1.1
86
34.4

Associated Gene:

Gene:
PREP
Ensembl Gene ID:
ENSAPLG00000014895
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015596
71569144 - 71668465
99322