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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71665925_71668170_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
71665925 - 71668170
Intron Length:
2246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GTGCTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
AATACATGAACA
Flanking Amino Acid:
DCKEQFEWLCKYSPLHNVKL
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
66.1
0.4
1
73
31.5
Major PPT
82.9
0.74
0.9
80.5
37
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
54
0.12
1.8
66.87
38.2

Associated Gene:

Gene:
PREP
Ensembl Gene ID:
ENSAPLG00000014895
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015596
71569144 - 71668465
99322