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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71702712_71704494_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
71702712 - 71704494
Intron Length:
1783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTATC
5'SS Class:
major
3'SS Sequence:
CTTATCTTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
AACAAATTAACA
Flanking Amino Acid:
IDKLSLLVSGRIRVTVDGEF
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
77.3
37.8
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
72.1
0.5
1
69.5
36.6
Minor 5ss
35.3
-1.7
2.9
45.6
42.6
Minor BPS
48.8
-0.1
1.8
58.54
40.1

Associated Gene:

Gene:
POPDC3
Ensembl Gene ID:
ENSAPLG00000022652
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020488
71702221 - 71705451
3231