About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71717298_71721907_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
71717298 - 71721907
Intron Length:
4610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TTTTTCTTCTCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
83.4
0.75
0.8
77.3
31.4
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
47.7
-0
3.6
87.15
38.9

Associated Gene:

Gene:
BVES
Ensembl Gene ID:
ENSAPLG00000014413
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040909
71716372 - 71743758
27387
ENSAPLT00000019483
71716372 - 71746900
30529
ENSAPLT00000019305
71716372 - 71745864
29493
ENSAPLT00000015064
71716372 - 71746900
30529