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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71724335_71731130_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71724335 - 71731130
Intron Length:
6796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATGTTTATTT
Flanking Amino Acid:
FIYLVYKRRPIKIEKELSSL
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
80.1
34.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.7
0.51
0.9
63.5
42.8
Minor 5ss
45.9
-0.4
2.5
60.3
44.3
Minor BPS
54.6
0.22
2
76.15
41.3

Associated Gene:

Gene:
BVES
Ensembl Gene ID:
ENSAPLG00000014413
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015064
71716372 - 71746900
30529
ENSAPLT00000040909
71716372 - 71743758
27387
ENSAPLT00000019483
71716372 - 71746900
30529
ENSAPLT00000019305
71716372 - 71745864
29493