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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71731319_71732248_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
71731319 - 71732248
Intron Length:
930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAGGTGCT
5'SS Class:
major
3'SS Sequence:
TTTTTATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTCGTACAT
Flanking Amino Acid:
DDRLSILLKGKMKVSYRGHF
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
72.8
35.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.6
0.96
0.7
85.4
34.1
Minor 5ss
35.6
-1.6
3.5
49.9
40.8
Minor BPS
48
-0
2.3
73.75
43

Associated Gene:

Gene:
BVES
Ensembl Gene ID:
ENSAPLG00000014413
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015064
71716372 - 71746900
30529
ENSAPLT00000040909
71716372 - 71743758
27387
ENSAPLT00000019483
71716372 - 71746900
30529
ENSAPLT00000019305
71716372 - 71745864
29493