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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71732358_71734327_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71732358 - 71734327
Intron Length:
1970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TAATTCTGAGTA
Flanking Amino Acid:
TQMNRGEKFQVTIIADDNCK
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
81.4
33.4
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
82.4
0.73
0.8
80.5
37
Minor 5ss
44.4
-0.6
3.2
67
44.3
Minor BPS
50.9
0.02
1.6
62.22
37.8

Associated Gene:

Gene:
BVES
Ensembl Gene ID:
ENSAPLG00000014413
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040909
71716372 - 71743758
27387
ENSAPLT00000019483
71716372 - 71746900
30529
ENSAPLT00000019305
71716372 - 71745864
29493
ENSAPLT00000015064
71716372 - 71746900
30529