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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71734496_71738754_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71734496 - 71738754
Intron Length:
4259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
ATATATATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCTCTTTTAAAA
Flanking Amino Acid:
SLNDPTLNDKASKKIDRQPS
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
81.4
32.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.1
0.47
1
67.9
42.3
Minor 5ss
39.7
-1.2
2.9
51.2
45.7
Minor BPS
56.1
0.19
1.4
60.98
39.4

Associated Gene:

Gene:
BVES
Ensembl Gene ID:
ENSAPLG00000014413
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019483
71716372 - 71746900
30529
ENSAPLT00000019305
71716372 - 71745864
29493
ENSAPLT00000015064
71716372 - 71746900
30529
ENSAPLT00000040909
71716372 - 71743758
27387