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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71738897_71746586_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
71738897 - 71746586
Intron Length:
7690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
GGAACTATGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTCTTTGGAACT
Flanking Amino Acid:
LRGTSSASSLRPGRTSPYLR
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.3
74.9
35.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
54
0.09
1.1
47.5
44.5
Minor 5ss
31.3
-2.1
3.2
40.8
38.7
Minor BPS
50.4
0.09
2.1
75.64
41.7

Associated Gene:

Gene:
BVES
Ensembl Gene ID:
ENSAPLG00000014413
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015064
71716372 - 71746900
30529