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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71744110_71746586_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
3UTR
Intron Coordinates:
71744110 - 71746586
Intron Length:
2477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAAGT
5'SS Class:
major
3'SS Sequence:
GGAACTATGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTCTTTGGAACT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
70.5
39.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
54
0.09
1.1
47.5
44.5
Minor 5ss
40.6
-1
3
58.1
46.1
Minor BPS
50.4
0.09
2.1
75.64
41.7

Associated Gene:

Gene:
BVES
Ensembl Gene ID:
ENSAPLG00000014413
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019483
71716372 - 71746900
30529