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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71767362_71806586_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
71767362 - 71806586
Intron Length:
39225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATTTTATAACC
Flanking Amino Acid:
TVQKRKPKGDRCYNCGGLDH
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
80.7
31.5
Major BPS
100
1.24
0.5
100
0
Major PPT
87
0.83
0.7
85.9
27.3
Minor 5ss
37.1
-1.5
2.6
47.1
41.2
Minor BPS
59
0.26
1.6
67.72
37.9

Associated Gene:

Gene:
LIN28B
Ensembl Gene ID:
ENSAPLG00000019549
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024694
71766992 - 71849287
82296