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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71806772_71845742_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71806772 - 71845742
Intron Length:
38971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGACCC
5'SS Class:
major
3'SS Sequence:
TTCCTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTCCTATTT
Flanking Amino Acid:
ESPVDVFVHQSKLYMEGFRS
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
66.2
38
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
85.6
0.8
0.8
80
30.9
Minor 5ss
34.9
-1.7
3.1
44.6
36.5
Minor BPS
60.1
0.4
1.9
84.08
37

Associated Gene:

Gene:
LIN28B
Ensembl Gene ID:
ENSAPLG00000019549
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024694
71766992 - 71849287
82296