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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71865991_71866815_F

Intron Information:

Intron Rank:
146504
Intron Class:
major
Intron Phase:
Intron Coordinates:
71865991 - 71866815
Intron Length:
825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTAATCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
ACTTGTTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
80.5
0.69
0.8
78.2
35.8
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
60.9
0.32
1.7
67.85
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028934
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037851
71864034 - 71868665
4632