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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71901504_71904145_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
71901504 - 71904145
Intron Length:
2642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
CGTGCCTCAATT
Flanking Amino Acid:
CTPLHLAARNGQKKCMSKLL
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
76.9
33.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
82.3
0.73
0.8
77
36.7
Minor 5ss
32.3
-2
2.9
32.2
42.1
Minor BPS
59
0.36
1.7
72.73
44.5

Associated Gene:

Gene:
HACE1
Ensembl Gene ID:
ENSAPLG00000006280
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006531
71895586 - 71942499
46914