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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71904624_71905669_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71904624 - 71905669
Intron Length:
1046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TCTTCTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTTCTGTTACA
Flanking Amino Acid:
HVACQNGHKTTVQCLLDSGA
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
85
0.79
0.8
79.4
32.6
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
51.2
0.03
2.3
70.62
41.9

Associated Gene:

Gene:
HACE1
Ensembl Gene ID:
ENSAPLG00000006280
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006531
71895586 - 71942499
46914