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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71914214_71918140_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
71914214 - 71918140
Intron Length:
3927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
AGAAACTTAAAT
Flanking Amino Acid:
VATTNGHKLLSLSSNYEAQM
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
88.1
0.86
0.6
81.6
30.5
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
53.8
0.2
1.7
68.13
41.3

Associated Gene:

Gene:
HACE1
Ensembl Gene ID:
ENSAPLG00000006280
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006531
71895586 - 71942499
46914