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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71918388_71921757_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71918388 - 71921757
Intron Length:
3370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GTATTTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTTGCATG
Flanking Amino Acid:
FINQTSHEQEPLELLWHSLD
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
81.6
33.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80
0.68
0.9
74.2
40
Minor 5ss
45.5
-0.5
2.8
58.6
40.2
Minor BPS
48.9
-0.2
1.9
63.05
39.8

Associated Gene:

Gene:
HACE1
Ensembl Gene ID:
ENSAPLG00000006280
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006531
71895586 - 71942499
46914