About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71926993_71930911_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
71926993 - 71930911
Intron Length:
3919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGGTTT
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTCTTTATTA
Flanking Amino Acid:
FTRSFYKHILGIPVNYQDVA
Intron Amino Acid Position:
705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1
73.9
37
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88
0.85
0.7
81.7
35.4
Minor 5ss
48.9
-0.1
3.1
69.4
43.7
Minor BPS
66.9
0.53
1.5
74.62
37.9

Associated Gene:

Gene:
HACE1
Ensembl Gene ID:
ENSAPLG00000006280
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006531
71895586 - 71942499
46914