Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71935818_71936865_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

71935818 - 71936865

Intron Length:

1048

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGCAGA

5'SS Class:

strong_major

3'SS Sequence:

GCTTTTTCTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTAAC

U12 Branch Point Sequence:

TCAGCACTAACC

Flanking Amino Acid:

LIQLFDEYELELLLSGMPEI

Intron Amino Acid Position:

815

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

70.7

41.3

Major BPS

64.5

0.36

65.2

28.2

Major PPT

74.2

0.54

75.3

33.5

Minor 5ss

38.9

-1.2

2.8

45.8

44.3

Minor BPS

-0.1

61.21

43.6

Associated Gene:

Gene:

HACE1

Ensembl Gene ID:

ENSAPLG00000006280

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006531

71895586 - 71942499

46914