Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_71997003_72002862_F

Intron Information:

Intron Rank:

148785

Intron Class:

major

Intron Phase:

Intron Coordinates:

71997003 - 72002862

Intron Length:

5860

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGCCTT

5'SS Class:

strong_major

3'SS Sequence:

TGATGTTTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

CTATTTTTACCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

74.5

41.9

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

69.4

0.44

1.1

65.4

45.3

Minor 5ss

43.9

-0.7

3.2

62.5

43.1

Minor BPS

61.4

0.44

1.6

75.56

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030098

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025201

71996852 - 72085340

88489

ENSAPLT00000039145

71997000 - 72003368

6369

ENSAPLT00000038090

71996852 - 72011127

14276