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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_72060977_72084473_F

Intron Information:

Intron Rank:
148787
Intron Class:
major
Intron Phase:
Intron Coordinates:
72060977 - 72084473
Intron Length:
23497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
CTTCCTTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.2
30.7
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
78
0.63
0.9
76.6
36.6
Minor 5ss
36.9
-1.5
3.2
48.5
47.7
Minor BPS
69.1
0.68
1.2
80.03
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030098
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025201
71996852 - 72085340
88489
ENSAPLT00000041364
72047339 - 72085340
38002
ENSAPLT00000036562
72035061 - 72085340
50280