About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_72166622_72167260_F

Intron Information:

Intron Rank:
142044
Intron Class:
major
Intron Phase:
Intron Coordinates:
72166622 - 72167260
Intron Length:
639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTGCC
5'SS Class:
major
3'SS Sequence:
TTCTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTATGGTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
67.6
39.2
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.7
0.83
0.7
84.4
30.6
Minor 5ss
35.5
-1.7
3
45.1
43
Minor BPS
46.1
-0.2
2.5
72.25
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018610
72154094 - 72174508
20415