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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_72185655_72187409_R

Intron Information:

Intron Rank:
144776
Intron Class:
major
Intron Phase:
Intron Coordinates:
72185655 - 72187409
Intron Length:
1755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTAAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTTTCTTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
84.3
27.2
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
80
0.67
0.9
77.7
34.4
Minor 5ss
47.2
-0.3
2.8
66.2
38.1
Minor BPS
82.1
0.99
1.2
87.66
28.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025262
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031229
72185124 - 72211378
26255