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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_72195621_72207532_R

Intron Information:

Intron Rank:
144778
Intron Class:
major
Intron Phase:
Intron Coordinates:
72195621 - 72207532
Intron Length:
11912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
TCATGGTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CACTTCTCAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.9
38.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
75.6
0.58
1
68.7
41.8
Minor 5ss
38.7
-1.3
2.8
47.8
47.9
Minor BPS
50.9
-0.1
1.6
51.85
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025262
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031229
72185124 - 72211378
26255