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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_72284354_72286343_F

Intron Information:

Intron Rank:
141058
Intron Class:
major
Intron Phase:
Intron Coordinates:
72284354 - 72286343
Intron Length:
1990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATATAATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
74.5
0.55
0.8
69.6
30.6
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
60.5
0.41
1.8
78.01
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025985
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033940
72280832 - 72286791
5960