Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_72312231_72313616_F

Intron Information:

Intron Rank:

144156

Intron Class:

major

Intron Phase:

Intron Coordinates:

72312231 - 72313616

Intron Length:

1386

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATATG

5'SS Class:

strong_major

3'SS Sequence:

TACACTTTACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTTAC

U12 Branch Point Sequence:

TTTTGCTTACAC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

84.2

33.9

Major BPS

66.4

0.41

1.1

57.4

41.4

Major PPT

65.8

0.36

59.1

41.3

Minor 5ss

38.7

-1.3

2.9

50.6

45.9

Minor BPS

56.9

0.19

2.1

75.43

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027698

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026542

72312200 - 72315321

3122