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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_72322463_72334092_F

Intron Information:

Intron Rank:
133572
Intron Class:
major
Intron Phase:
Intron Coordinates:
72322463 - 72334092
Intron Length:
11630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTAGTC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTTCCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
66.4
37.9
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
93.7
0.98
0.6
88.2
29.1
Minor 5ss
34
-1.8
3.7
50.6
46
Minor BPS
44.3
-0.4
3.6
73.48
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021843
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041309
72322175 - 72336837
14663