Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_72334203_72336409_F

Intron Information:

Intron Rank:

133571

Intron Class:

major

Intron Phase:

Intron Coordinates:

72334203 - 72336409

Intron Length:

2207

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAAATC

5'SS Class:

strong_major

3'SS Sequence:

CATGTTCTTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAT

U12 Branch Point Sequence:

TGATGTTCATGT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

0.9

81.4

30.4

Major BPS

84.8

0.86

85.7

34.9

Major PPT

75.6

0.58

0.9

69.8

36.3

Minor 5ss

37.4

-1.4

3.2

51.9

44.9

Minor BPS

40.1

-0.6

2.2

57.38

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021843

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041309

72322175 - 72336837

14663

ENSAPLT00000032130

72333719 - 72336837

3119