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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7259595_7294332_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7259595 - 7294332
Intron Length:
34738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CCTCTCTTATTT
Flanking Amino Acid:
VQGPEDKVNAMKSWLTKVGS
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
90.3
0.91
0.7
85.5
28.4
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
55
0.23
1.6
68.23
43.4

Associated Gene:

Gene:
ACYP2
Ensembl Gene ID:
ENSAPLG00000019105
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026314
7259480 - 7296790
37311