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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_72602726_72605111_R

Intron Information:

Intron Rank:
130330
Intron Class:
major
Intron Phase:
Intron Coordinates:
72602726 - 72605111
Intron Length:
2386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAG
U12 Branch Point Sequence:
GTTCTCTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
67.2
0.43
1.5
77.4
37.3
Major PPT
78.6
0.64
0.8
72.6
32.3
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
49
-0
2
65.67
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017342
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042419
72602308 - 72606857
4550