About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_72699578_72700169_F

Intron Information:

Intron Rank:
148635
Intron Class:
major
Intron Phase:
Intron Coordinates:
72699578 - 72700169
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTGTTTTGTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
88.2
0.86
0.8
81.3
36.4
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
42.5
-0.5
3.4
73.17
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030027
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032203
72699412 - 72701030
1619