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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_72700281_72700739_F

Intron Information:

Intron Rank:
148636
Intron Class:
major
Intron Phase:
Intron Coordinates:
72700281 - 72700739
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATACCTTGAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
80.6
33.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
34
-1.8
3.2
48.4
47.4
Minor BPS
66.7
0.52
1.5
73.75
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030027
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032203
72699412 - 72701030
1619