Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_72734783_72736022_F

Intron Information:

Intron Rank:

148262

Intron Class:

major

Intron Phase:

Intron Coordinates:

72734783 - 72736022

Intron Length:

1240

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTTAT

5'SS Class:

strong_major

3'SS Sequence:

TCCATATCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

TTTTCCATATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.9

0.94

0.8

85.7

25.6

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

72.8

0.51

0.8

70.2

35.3

Minor 5ss

-0.2

2.5

66.4

45.1

Minor BPS

70.8

0.73

1.9

93.26

34.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029829

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026213

72734298 - 72744351

10054