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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_72737631_72743351_F

Intron Information:

Intron Rank:
148264
Intron Class:
major
Intron Phase:
Intron Coordinates:
72737631 - 72743351
Intron Length:
5721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTAAATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TCCTCCTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
60.5
0.24
0.9
60.1
34.3
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
67.5
0.63
1.7
79.08
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029829
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026213
72734298 - 72744351
10054