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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7294443_7296706_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7294443 - 7296706
Intron Length:
2264

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCGGCGGCG
5'SS Class:
weak_major
3'SS Sequence:
TTTTTCAAATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TATTTTTCAAAT
Flanking Amino Acid:
FGRVQGEGRGYTEEEARKLG
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.1
0.05
1.3
49.5
38.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
76.2
0.59
1
76.5
36.6
Minor 5ss
17.5
-3.8
4.1
19.8
38
Minor BPS
61
0.42
1.6
78.4
37.6

Associated Gene:

Gene:
ACYP2
Ensembl Gene ID:
ENSAPLG00000019105
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026314
7259480 - 7296790
37311