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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7319753_7320302_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7319753 - 7320302
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TCTTATATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TAATCCTAAAGT
Flanking Amino Acid:
GFARLLINLLKKKELLSRDD
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
78.2
36.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79
0.65
0.8
73.6
35.4
Minor 5ss
37.8
-1.4
2.7
44.3
36.8
Minor BPS
60.5
0.41
2
78.04
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008307
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008869
7311998 - 7337045
25048