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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7320420_7324738_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7320420 - 7324738
Intron Length:
4319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
GTATCCTTAATA
Flanking Amino Acid:
TEHLGLNWFPNSVESVLKTL
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
81.6
33.2
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
89.5
0.89
0.7
88.2
29.1
Minor 5ss
45.5
-0.5
2.8
58.6
40.2
Minor BPS
81.6
0.99
1
81.35
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008307
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008869
7311998 - 7337045
25048