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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_73228800_73230064_R

Intron Information:

Intron Rank:
144398
Intron Class:
major
Intron Phase:
Intron Coordinates:
73228800 - 73230064
Intron Length:
1265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCTA
5'SS Class:
major
3'SS Sequence:
TATCTGTCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TAAAACTAAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.5
38.4
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
75.4
0.57
0.9
69.4
36.6
Minor 5ss
44
-0.7
2.8
59
45.4
Minor BPS
48.5
-0.1
1.8
59.47
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024970
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046480
73228603 - 73241891
13289