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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_73230154_73232572_R

Intron Information:

Intron Rank:
144399
Intron Class:
major
Intron Phase:
Intron Coordinates:
73230154 - 73232572
Intron Length:
2419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGTGGAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTAATGTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
80
0.75
1
78.6
31
Major PPT
64.6
0.33
1.7
76.2
37.8
Minor 5ss
37
-1.5
2.8
43.2
43.8
Minor BPS
53.5
0.19
2.1
72.89
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024970
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046480
73228603 - 73241891
13289