About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_73230828_73232572_R

Intron Information:

Intron Rank:
144391
Intron Class:
major
Intron Phase:
Intron Coordinates:
73230828 - 73232572
Intron Length:
1745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TATATGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
GCTCCTTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
80.8
0.69
0.9
77.3
41.4
Minor 5ss
37
-1.5
2.8
43.2
43.8
Minor BPS
51.2
0.12
1.7
67.36
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024970
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037850
73230704 - 73241891
11188