About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7324784_7325490_F


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
7324784 - 7325490

Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ACC|GTGAGTAAC

5'SS Class:
major

3'SS Sequence:
GCCTTGCATTCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGTTCAA

U12 Branch Point Sequence:
TTGCCTTGCATT

Flanking Amino Acid:
VLKTLVKSCRPYFPEDATAE

Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
67
0.4
1.3
68.8
38

Major BPS
75.6
0.64
1.1
77.7
37.1

Major PPT
69.4
0.44
1
65.6
40.2

Minor 5ss
32.4
-2
2.7
41.3
38.3

Minor BPS
48.5
-0
1.9
69.84
41.7

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

7311998 - 7337045
25048